Nurturing Life Sciences
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Collaborative gene interaction
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#Unit 3. Fundamental Processes
The palm domain is composed of a b sheet and contains the primary elements of the catalytic site.
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DNA polymerase binds two divalent metal ions (typically Mg2+ orZn2+) that alter the chemical environment around the correctly base-paired dNTP and the 3’-OH of the primer
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One metal ion generate a 3’O- that is primed for the nucleophilic attack of the a-phosphate of the incoming dNTP.
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The second metal ion coordinates the negative charges of the b-phosphate and g-phosphate of the dNTP and stabilizes the pyrophosphate produced by joining the primer and the incoming nucleotide
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DNA polymerase “grips” the template and the incoming nucleotide when a correct base pair is made via Arg, Lys and Tyr residue in its alpha helix
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Base-pair geometry and the complementarity between the bases cannot reach the extraordinarily high levels of accuracy