The AAA ATPases Pex1 and Pex6 complex use the energy from ATP hydrolysis and causing the detachment of Pex 5 receptors into cytosol.

TLS Online TPP Program

#Id: 6303

#Unit 3. Fundamental Processes

RNA polymerase can initiate a new RNA chain de novo on a DNA template and thus does not need a primer

TLS Online TPP Program

#Id: 6304

#Unit 3. Fundamental Processes

Breaking and remaking bonds in the process of the nucleotide addition cycle and undergoing translocation by a Brownian ratchet mechanism.Indeed, rrn  transcription is insensitive to iNTP and ppGpp in mutants lacking DskA.

TLS Online TPP Program

#Id: 6305

#Unit 3. Fundamental Processes

The E. coli rrn promoters are also regulated by a pair of small molecules: the initiating NTP (the iNTP) and an alarmone,  guanosine 5 -diphosphate 3-diphosphate (ppGpp). An abundance of iNTP indicates that the concentration of  nucleotides is high, and therefore it is appropriate to synthesize plenty of rRNA. 

TLS Online TPP Program

#Id: 6306

#Unit 3. Fundamental Processes

Accordingly, iNTP stabilizes the open promoter complex, stimulating transcription. On the other hand, when cells are starved for amino acids, protein synthesis cannot occur readily and the need for ribosomes (and rRNA) decreases. Ribosomes sense the lack of amino acids when uncharged tRNAs bind to the ribosomal site where aminoacyl-tRNAs would normally bind. 

TLS Online TPP Program

#Id: 6307

#Unit 3. Fundamental Processes

Under these conditions, a ribosome-associated protein called RelA receives the “alarm” and produces the “alarmone” ppGpp, which destabilizes open promoter complexes whose lifetimes are normally short, thus inhibiting Transcription. 

The protein DskA binds to RNA polymerase and reduces the lifetimes of the rrn open promoters to a level at which they are responsive to changes in iNTP and ppGpp concentrations. Thus, DskA is required for the regulation of rrn  transcription by these two small molecules. 

TLS Online TPP Program

#Id: 6308

#Unit 3. Fundamental Processes

RNA polymerase performs two proofreading functions on that growing transcript. 

The first of these is called pyrophosphorolytic editing. In this, the enzyme uses its active site, in a simple back-reaction, to catalyze the removal of an incorrectly inserted ribonucleotide, by reincorporation of PPi. The enzyme can then incorporate another ribonucleotide in its place in the growing RNA chain. Note that the enzyme can remove either correct or incorrect bases in this manner, but spends longer hovering over mismatches than matches, and thus removes the former more frequently.