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The specificity of the PCR depends crucially upon the primers. The following factors are important in choosing effective primers


Primers should be 17 to 30 nucleotides in length


A GC content of about 50% is ideal. For primers with a low GC content, it is desirable to choose a long primer to avoid a low melting

 temperature.


Sequences with long runs (i.e., more than three or four) of a single nucleotide should be avoided.





#Unit 13. Methods in Biology #PCR #Part B Pointers