The rate of reassociation/renaturation is inversely proportional to sequence complexity.

TLS Online TPP Program

#Id: 6759

#Unit 3. Fundamental Processes

PNPase a 3’ to 5’ exonucleases in E. coli, are unable to progress through double-stranded regions. Thus, the stem-loop structure at the 3’ end of many bacterial mRNAs protects the mRNA from direct 3’ attack.

TLS Online TPP Program

#Id: 6760

#Unit 3. Fundamental Processes

RNase E and PNPase, along with a helicase and another accessory enzyme, form a multiprotein complex called the degradosome.

TLS Online TPP Program

#Id: 6761

#Unit 3. Fundamental Processes

Cytoplasmic mRNAs are degraded by one of the three pathways. For most mRNAs, the deadenylation-dependent pathway is followed These dense regions of cytoplasm contain the decapping enzyme (DCP1/DCP2), activators of decapping (DHH, PAT1, LSM1-7), and the major 5′→3′ exoribonuclease XRN1, as well as densely associated mRNAs

TLS Online TPP Program

#Id: 6762

#Unit 3. Fundamental Processes

The exposed cap is then removed by a decapping enzyme (DCP1/DCP2), unprotected mRNA susceptible to degradation by XRN1, a 5′→3′ exoribonuclease. Removal of the poly(A) tail also makes mRNAs susceptible to degradation by cytoplasmic exosomes containing 3′→5′ exonucleases.

TLS Online TPP Program

#Id: 6763

#Unit 3. Fundamental Processes

The 5′→3′ exonuclease pathway predominates in yeast, and the 3′→5′ exosome pathway predominates in mammalian cells.  The decapping enzymes and 5′→3′ exonuclease are concentrated in P bodies

TLS Online TPP Program

#Id: 6764

#Unit 3. Fundamental Processes

The rate of mRNA deadenylation varies inversely with the frequency of translation initiation for an mRNA:  the higher the frequency of initiation, the slower the rate of deadenylation.